Difference between revisions of "Federated Cloud Communities"
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Bioinformatics | Bioinformatics | ||
| highthroughputseq.egi.eu | | highthroughputseq.egi.eu | ||
| GoeGrid, IFCA | | [https://appdb.egi.eu/store/site/goegrid GoeGrid], [https://appdb.egi.eu/store/site/ifca-lcg2 IFCA] | ||
| [[FedCloudRNASeq| Wiki page]] | | [[FedCloudRNASeq| Wiki page]] | ||
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Revision as of 19:04, 11 December 2014
Main | Roadmap and Innovation | Technology | For Users | For Resource Providers | Media |
Introduction
This wiki page provides information about the user communities and use cases who are exploiting the EGI Federated Cloud infrastructure and its services. These use cases and communities collaborated (or collaborate in the past) with the EGI Federated Cloud to enable scientific applications, simulations or tools in virtualised environments. The evolution of the Federated Cloud infrastructure is driven by the requirements of these use cases and the needs of the broader scientific community and industry in the European Research Area.
The EGI Federated Cloud User Support (FCUS) team during the porting and integration work of the use cases into the Federated Cloud, follows a well defined process described bellow. The various phases are described as well, and will be used in the next coming tables to list the ongoing, production and closed use cases.
Status | Description |
---|---|
Pre-assessment | FCUS members identified a potential use case that can profit from the EGI Federated Cloud services |
Assessed | The use case requirements are assessed with relevant information added to a dedicated wiki page, to manage the full porting & integration process |
Preparatory | The user & FCUS team setup the environment to execute tests on the FedCloud (configuration of client environment, identify resource providers, upload vm images, ...) |
Test & Integration | Users are accessing the FedCloud through the fedcloud.egi.eu VO to execute tests while integrate their applications to the infrastructure |
Pre-production | Test & integration phases were successfully completed. Create a production Virtual Organization (VO) or join an already existing VO |
Production | Use case is being used in production. The use case completed all tests and is regularly making use of the Federated Cloud using a production level VO |
Closed | Test & integration successfully completed. Use case does not foresee moving into production. |
Cancelled | Test & integration did not successfully completed. User cancelled the use case. |
Production Use Cases
Note: use cases in production status phase
Community | Description | Scientific discipline | VO | Sites | Further information |
---|---|---|---|---|---|
BioVeL | BioVeL Portal: it is a browser-based interface that contains everything necessary to run users' workflow without user having to install anything on their own computer. | Natural sciences
Biological sciences Biodiversity conservation |
biomed | PRISMA-INFN-BARI, BIFI, CESNET | Wiki page |
BioVeL | OpenRefine: it is a powerful tool for working with messy data, cleaning it, transforming it from one format into another, extending it with web services, and linking it to databases. | Natural sciences
Biological sciences Biodiversity conservation |
biomed | PRISMA-INFN-BARI, BIFI, CESNET | Wiki page |
BioVeL | OpenModeller: The Ecological Niche Modelling (ENM) Workflow takes as input a file containing species occurrence points to create a model with the openModeller Web Service. | Natural sciences
Biological sciences Biodiversity conservation |
biomed | CESNET | Wiki page |
BioVeL | BioSTIF: it is a web map application designed for the interactive visualisation of spatio-temporal data. | Natural sciences
Biological sciences Biodiversity conservation |
biomed | PRISMA-INFN-BARI, BIFI, CESNET | Wiki page |
Peachnote | OCR analysis in music scores | Humanities
Arts Musicology |
peachnote.com | CESNET-MetaCloud, FZJ | Wiki page |
CUSM, Würzburg University | READemption: RNA-seq. analysis of data to understand different biological features and behaviour. | Natural sciences
Biological sciences Bioinformatics |
highthroughputseq.egi.eu | GoeGrid, IFCA | Wiki page |
Use Cases under development
Note: use cases from assessed to pre-production status phases
Community | Description | Registration date | Scientific discipline | Status | Further information |
---|---|---|---|---|---|
Aix Marseille Universite | RSAT (Regulatory Sequence Analysis Tools): it provides a series of modular computer programs specifically designed for the detection of regulatory signals in non-coding sequences. | 2014.10.08 | Natural sciences
Biological sciences Other |
Preparatory | Wiki page |
BILS | BILS portal | 2014.10.31 | Natural sciences
Biological sciences |
Assessed | Wiki page |
BILS | PConsC2 | 2014.10.31 | Natural sciences
Biological sciences |
Preparatory | Wiki page |
BILS | Genome Annotation service | 2014.10.31 | Natural sciences
Biological sciences |
Assessed | Wiki page |
BioVeL | EDIT: it is a portal to access/visualize Catalogue of Life taxonomy data | 2013 | Natural sciences
Biological sciences Biodiversity conservation |
Assessed | Wiki page |
BSIM2 | Proof of Concept and optimization of data workflow (several use cases) | 2014.04.12 | Natural sciences
Biological sciences |
Assessed | Wiki page |
CERN ATLAS | Run a cluster on-demand on the cloud to absorb peaks from ATLAS grid. | 2013 | Natural sciences
Phisical sciences Accelerator physics |
Test & Integration | Wiki page |
CERN ATLAS | Running Vac/VCycle on the EGI FedCloud | 2014.10.15 | Natural sciences
Phisical sciences |
Test & Integration | Wiki page |
CERN LHCb | Running Vac/VCycle on the EGI FedCloud | 2014.11.19 | Natural sciences
Phisical sciences |
Test & Integration | Wiki page |
CHAIN-REDS | WRF: weather research forecast | 2013 | Natural sciences
Earth sciences Atmospheric science |
Pre-production | Wiki page |
CHAIN-REDS | R: language and environment for statistical computing and graphics | 2013 | Natural sciences
Mathematics Statistics and probability |
Pre-production | Wiki page |
CHAIN-REDS | Octave | 2013 | Natural sciences
Mathematics Applied mathematics |
Pre-production | Wiki page |
Charles University in Prague - First Faculty of Medicine | Physiome project: run on the FedCloud a system to support modelling of physiological systems. | 2014.05.29 | Medical and Health Sciences
Basic medicine Physiology |
Assessed | Wiki page |
CSC / ELIXIR | Chipster: it is a user-friendly analysis software for high-throughput data. It contains over 300 analysis tools for next generation sequencing (NGS), microarray, proteomics and sequence data | 2014.08.01 | Natural sciences
Biological sciences Bioinformatics |
Test & Integration | Wiki page |
DCH-RP | Deploy HAPPI sw in the FedCloud | 2014.07.08 | Support activities
Digital archivies |
Test & Integration | Wiki page |
DCH-RP | Long term preservation in the cloud | 2014.03.12 | Support activities
Digital archivies |
Preparatory | Wiki page |
DRIHM | Run Hydrology and Hydraulic models on the cloud | 2014.06.18 | Natural sciences
Earth sciences Hydrology |
Test & Integration | Wiki page |
ELIXIR | Access to EGI Cloud Marketplace via EBI IdP | 2014.05.01 | Natural sciences
Biological sciences Bioinformatics |
Test & Integration | Wiki page |
HARNESS | The HARNESS project is developing a new generation of cloud computing platforms that integrate heterogeneous hardware resources to provide vastly increased performance with reduced energy consumption and lower cost. HARNESS would like to organise training events using FedCloud resources | 2014.10.06 | Natural sciences
Computer sciences Distributed Computing |
Assessed | Wiki page |
HARNESS | The HARNESS project developed a PaaS to better exploit cloud resources. Aim of this use case is deploying the HARNESS PaaS on the EGI Federated Cloud to make it available for EGI users. | 2014.10.06 | Natural sciences
Computer sciences Distributed Computing |
Assessed | Wiki page |
IFCA | Hydrodynamic modeling using EGI FedCloud | 2014.09.25 | Natural sciences
Earth sciences Hydrology |
Test & Integration | Wiki page |
IFCA | Water Quality modeling using EGI FedCloud | 2014.11.06 | Natural sciences
Biological sciences Ecology |
Test & Integration | Wiki page |
IFCA | CMS Open Data Portal | 2014.11.20 | Natural sciences
Physical sciences High energy physics |
Test & Integration | Wiki page |
IFCA | TRUFA (Transcriptomes User-Friendly Analysis): it is a free webserver designed to help you perform RNA-seq analysis. | 2014.08.01 | Natural sciences
Biological sciences Evolutionary biology |
Assessed | Wiki page |
INERTIA | (several use cases) | 2014.09.01 | Engineering and technology
Environmental engineering Energy and fuels |
Test & Integration | Wiki page |
Instituto de Astrofísica de Andalucía | Calibration, Analysis and Modelling of Radio-Astronomy Data: Data Development of a calibration pipeline for LOFAR data | 2014.10.06 | Natural sciences
Phisical sciences Astronomy |
Assessed | Wiki page |
Instituto de Astrofísica de Andalucía | Calibration, Analysis and Modelling of Radio-Astronomy Data: Modelling of the kinematic of galaxies (GIPSY) | 2014.10.06 | Natural sciences
Phisical sciences Astronomy |
Assessed | Wiki page |
VERCE | Running a web service on the FedCloud | 2013 | Natural sciences
Earth sciences Seismology |
Preparatory | Wiki page |
Closed Use Cases
Note: use cases that reached the Closed status phase
Community | Description | Scientific discipline | Outcome | Further information |
---|---|---|---|---|
CLARIN | BNCWeb: scalable ‘British National Corpus’ service | Humanities
Languages and literature Linguistics |
Wiki page | |
Cranfield University | Exploit the FedCloud capabilities to study resource allocation and scheduling algorithms for federated cloud systems | Natural sciences
Computer sciences Distributed computing |
Wiki page | |
ENVRI | Data access, catalog and dissemination (EISCAT 3D) | Natural sciences
Phisical sciences Space science |
Wiki page | |
ESA | SSEP Data processing | Natural sciences | Wiki page | |
Jena University | JAMS (Jena Adaptable Modelling System): run JAMS in the FedCloud | Natural sciences
Earth sciences Hydrology |
PoC was successful, but to operate it they would need a fixed SLA and a pay-per-use model, to be sure to get the required resources when needed. | Wiki page |
WeNMR | Validating and improving biomolecular NMR structures | Natural sciences
Biological sciences Structural biology |
Wiki page |
High level tools
Note: High level tools in production status phase
Community | Description | Registration date | Status | Further information |
---|---|---|---|---|
Catania Science Gateway Framework | Exploit SaaS model | Production | CSGF App. Broker HowTo | |
DIRAC | VMDIRAC portal as VM scheduler with 3rd party broker (with WeNMR) | Production | FedCloudDIRAC | |
SCI-BUS | Test/debug new releases of WS-PGRADE | Test & Integration | FedCloudWSPGRADE |