The wiki is deprecated and due to be decommissioned by the end of September 2022.
The content is being migrated to other supports, new updates will be ignored and lost.
If needed you can get in touch with EGI SDIS team using operations @ egi.eu.
Difference between revisions of "Access Chipster"
| Line 33: | Line 33: | ||
* Click on the <u>"Show form"</u>. | * Click on the <u>"Show form"</u>. | ||
* If the account has expired the Science Gateway will automatically generate a new password for the user. | * If the account has expired the Science Gateway will automatically generate a new password for the user. | ||
* Click on "Execute" to trigger the creation/update of the temporary account in the Chipster testbed. | ** Click on <u>"Execute"</u> to trigger the creation/update of the temporary account in the Chipster testbed. | ||
* User can monitor the execution of the task clicking in the "Show" button. | ** User can monitor the execution of the task clicking in the "Show" button. | ||
* When the account is create/renewed, the user can access the [http://193.144.35.160:8081/chipster.jnlp Chipster] server. | ** When the account is create/renewed, the user can access the [http://193.144.35.160:8081/chipster.jnlp Chipster] server. | ||
[[File:Chipster.png|center|900px]] | [[File:Chipster.png|center|900px]] | ||
Revision as of 12:23, 3 June 2019
Access Chipster
Introduction
This guide is intended for researchers who want to use Chipster (v3.12.3), an user-friendly software for analyzing high-throughput data such as NGS and microarrays, in the cloud-based resources provided by EGI.
The software contains over 400 analysis tools and a large collection of reference genomes.
Users can save and share automatic analysis workflows, and visualize data interactively using for example the built-in genome browser.
The Chipster server configured at CESGA offers:
- 8 vCPU cores,
- 32GB of RAM,
- 1TB of block storage in /data,
- Software and tools (v3.12.3) are in available under the /cvmfs/chipster.egi.eu/ partition.
This how-to has been tested in the EGI Applications on Demand Infrastructure.
The only pre-requisite to access and use the Chipster testbed is to be a member of this infrastructure.
Objectives
In this guide we will show how to:
- Create a temporary Chipster account;
- Use the temporary account to access the testbed and run the bio-informatics applications.
How to create/review a temporary account
In this section we will show how to create/renew your temporary Chipster account using the JSR 286 portlet available in the FutureGateway Science Gateway.
By default, a temporary account to access the Chipster server is valid for one month.
To create/renew your temporary account:
- As soon as your service-order request to access the EGI Applications on Demand (AoD) service is approved by the operators of the service, please proceed to access the FutureGateway Science Gateway with your federated account.
To generate/review your temporary Chipster account, please use this link.
- Click on the "Show form".
- If the account has expired the Science Gateway will automatically generate a new password for the user.
- Click on "Execute" to trigger the creation/update of the temporary account in the Chipster testbed.
- User can monitor the execution of the task clicking in the "Show" button.
- When the account is create/renewed, the user can access the Chipster server.
