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<!-- VERY IMPORTANT | <!-- VERY IMPORTANT | ||
This report covers support activities to existing user communities, and belongs to EGI-InSPIRE SA1 (Task SA1.7 - Support Teams). The outreach to new communities activities that NGIs perform under NA2 are gathered through the Virtual Teams. However, there may be outreach activities that do outside of VTs. You can report about these in your 2.2.3 paragraph as well. | This report covers support activities to existing user communities, and belongs to EGI-InSPIRE SA1 (Task SA1.7 - Support Teams). The outreach to new communities activities that NGIs perform under NA2 are gathered through the Virtual Teams. However, there may be outreach activities that do outside of VTs. You can report about these in your 2.2.3 paragraph as well. | ||
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!scope="col"| Author | !scope="col"| Author | ||
|- | |- | ||
| | | QR15 | ||
| | | NGI_AEGIS | ||
| | | Institute of Physics Belgrade | ||
| | | Vladimir Slavnic | ||
|- | |- | ||
|} | |} | ||
| Line 62: | Line 62: | ||
!scope="col"|Publication title||Journal / Proceedings title||align="left" |Journal references<br> ''Volume number<br> Issue<br><br>Pages from - to''||align="left" |Authors ''<br>1.<br>2.<br>3.<br>Et al?'' | !scope="col"|Publication title||Journal / Proceedings title||align="left" |Journal references<br> ''Volume number<br> Issue<br><br>Pages from - to''||align="left" |Authors ''<br>1.<br>2.<br>3.<br>Et al?'' | ||
|- | |- | ||
| Atomic and Electronic Structure of Grain Boundaries in Crystalline Organic Semiconductors | |||
| Phys. Scr. T | |||
| 157 (2013) 014061; DOI: [http://dx.doi.org/10.1088/0031-8949/2013/T157/014061 10.1088/0031-8949/2013/T157/014061] | |||
| 1. M. Mladenovic<br>2. N. Vukmirovic<br>3. I. E. Stankovic | |||
|- | |||
| Phonon and Magnetic Dimer Excitations in Fe-based S=2 Spin-ladder Compound BaFe2Se2O | |||
| Phys. Rev. B | |||
| 89 (2014) 014301; DOI: [http://dx.doi.org/10.1103/PhysRevB.89.014301 10.1103/PhysRevB.89.014301] | |||
| 1. Z. V. Popovic<br>2. M. Scepanovic<br>3. N. Lazarevic<br>Et al | |||
|- | |||
| Self-assembly of Magnetic Balls: From Chains to Tubes | |||
| Phys. Rev. E | |||
| 89 (2014) 011202(R); DOI: [http://dx.doi.org/10.1103/PhysRevE.89.011202 10.1103/PhysRevE.89.011202] | |||
| 1. R. Messina<br>2. L. Abou Khalil<br>3. I. E. Stankovic | |||
|- | |||
| The molecular properties of nitrobenzanthrone isomers and their mutagenic activities | |||
| Chemosphere | |||
| In press (2013); DOI [http://dx.doi.org/10.1016/j.chemosphere.2013.11.057 10.1016/j.chemosphere.2013.11.057] | |||
| 1. Bojana D. Ostojić<br>2. Branislav Stanković<br>3. Dragana S. Đorđević | |||
|} | |} | ||
| Line 68: | Line 87: | ||
===2.1. User Support achievements=== | ===2.1. User Support achievements=== | ||
In QR15, successful support to various user communities continued. | |||
In addition to day-to-day user support activities, in cooperation with the Grid users coming from Serbian chemistry community MOPAC software package was updated on AEGIS01-IPB-SCL site to its latest version. MOPAC (Molecular Orbital PACkage) (http://openmopac.net/) is a semiempirical quantum chemistry program based on Dewar and Thiel's NDDO approximation. This package was updated to MOPAC2012 version that enables users to use additional methods (PM7 and PM7-TS) compared to previous MOPAC2009 version. | |||
As an outcome of colaboration with the emerging agricultural community number of application was ported to Grid and registered at EGI AppDB: | |||
* agDataHarvester which performs harvesting of any dataset exposed via an OAI-PMH target (http://appdb.egi.eu/store/software/agdataharvester), | |||
* agDCtoLOM, a tool for transforming metadata into another schema using XSLT files (http://appdb.egi.eu/store/software/agdatatransformation), | |||
* agLOMtoAK which performs conversion of a set of metadata records with XML binding that follow IEEE LOM metadata format into AKIF format (http://appdb.egi.eu/store/software/aglomtoak), | |||
* agLOMtoRDF which performs conversion of a set of metadata records with XML binding that follow IEEE LOM metadata format into RDF/XML binding (http://appdb.egi.eu/store/software/aglomtordf), | |||
* agRecommender which can be used to estimate recommendations using rating data as input (http://appdb.egi.eu/store/software/agrecommender), | |||
* agrovocTagger, a tool with the purpose to index documents with the Agrovoc Thesaurus (http://appdb.egi.eu/store/software/agrovoctagger), | |||
* agTextMining that provides text mining services to datasets (http://appdb.egi.eu/store/software/agtextmining), | |||
* agTriplificator that converts a LOM IEEE file into RDF triples and save them to a 4store triplestore (http://appdb.egi.eu/store/software/agtriplificator), | |||
* JSONCLI, a command line utility that pipe in JSON data for pretty-printing, validation, filtering, and modification (http://appdb.egi.eu/store/software/jsoncli). | |||
Regular maintenance of NGI_AEGIS Helpdesk (https://helpdesk.aegis.rs/) and AEGIS web site (http://www.aegis.rs/) was performed in this quarter. New IP address was assigned to NGI_AEGIS Helpdesk due to the migration of servers at Karlsruhe Institute of Technology (KIT) that are hosting this service to the new network and DNS hosted at IPB was updated accordingly. We continued to participate in testing of GGUS and NGI_AEGIS Helpdesk interface (after each new release of GGUS portal) and GGUS team was informed about issues in synchronization between GGUS and NGI-AEGIS Helpdesk xGUS instance (https://helpdesk.aegis.rs/?mode=ticket_info&ticket_id=123 and https://helpdesk.aegis.rs/?mode=ticket_info&ticket_id=127). | |||
As an extension of our user support activities NGI_AEGIS joined Distributed Competence Centre (https://wiki.egi.eu/wiki/Distributed_Competence_Centre) with the expertise in compute services, MPI, core services and application porting and testing in the area of physics, chemistry, engineering and materials science. | |||
===2.2. Plans=== | ===2.2. Plans=== | ||
Further collaboration with the supported user communities in porting of new applications to Grid and updating of already ported ones, as well as working on advertising of Grid to new users and scientific communities. | |||
===2.3. Issues and mitigation=== | ===2.3. Issues and mitigation=== | ||
Latest revision as of 11:42, 23 January 2015
| EGI Inspire Main page |
| Inspire reports menu: | Home • | SA1 weekly Reports • | SA1 Task QR Reports • | NGI QR Reports • | NGI QR User support Reports |
| Quarterly Report Number | NGI Name | Partner Name | Author |
|---|---|---|---|
| QR15 | NGI_AEGIS | Institute of Physics Belgrade | Vladimir Slavnic |
1. MEETINGS AND DISSEMINATION
1.1. CONFERENCES/WORKSHOPS ORGANISED
| Date | Location | Title | Participants | Outcome (Short report & Indico URL) |
|---|---|---|---|---|
1.3. PUBLICATIONS
| Publication title | Journal / Proceedings title | Journal references Volume number Issue Pages from - to |
Authors 1. 2. 3. Et al? |
|---|---|---|---|
| Atomic and Electronic Structure of Grain Boundaries in Crystalline Organic Semiconductors | Phys. Scr. T | 157 (2013) 014061; DOI: 10.1088/0031-8949/2013/T157/014061 | 1. M. Mladenovic 2. N. Vukmirovic 3. I. E. Stankovic |
| Phonon and Magnetic Dimer Excitations in Fe-based S=2 Spin-ladder Compound BaFe2Se2O | Phys. Rev. B | 89 (2014) 014301; DOI: 10.1103/PhysRevB.89.014301 | 1. Z. V. Popovic 2. M. Scepanovic 3. N. Lazarevic Et al |
| Self-assembly of Magnetic Balls: From Chains to Tubes | Phys. Rev. E | 89 (2014) 011202(R); DOI: 10.1103/PhysRevE.89.011202 | 1. R. Messina 2. L. Abou Khalil 3. I. E. Stankovic |
| The molecular properties of nitrobenzanthrone isomers and their mutagenic activities | Chemosphere | In press (2013); DOI 10.1016/j.chemosphere.2013.11.057 | 1. Bojana D. Ostojić 2. Branislav Stanković 3. Dragana S. Đorđević |
2. ACTIVITY REPORT
2.1. User Support achievements
In QR15, successful support to various user communities continued.
In addition to day-to-day user support activities, in cooperation with the Grid users coming from Serbian chemistry community MOPAC software package was updated on AEGIS01-IPB-SCL site to its latest version. MOPAC (Molecular Orbital PACkage) (http://openmopac.net/) is a semiempirical quantum chemistry program based on Dewar and Thiel's NDDO approximation. This package was updated to MOPAC2012 version that enables users to use additional methods (PM7 and PM7-TS) compared to previous MOPAC2009 version.
As an outcome of colaboration with the emerging agricultural community number of application was ported to Grid and registered at EGI AppDB:
- agDataHarvester which performs harvesting of any dataset exposed via an OAI-PMH target (http://appdb.egi.eu/store/software/agdataharvester),
- agDCtoLOM, a tool for transforming metadata into another schema using XSLT files (http://appdb.egi.eu/store/software/agdatatransformation),
- agLOMtoAK which performs conversion of a set of metadata records with XML binding that follow IEEE LOM metadata format into AKIF format (http://appdb.egi.eu/store/software/aglomtoak),
- agLOMtoRDF which performs conversion of a set of metadata records with XML binding that follow IEEE LOM metadata format into RDF/XML binding (http://appdb.egi.eu/store/software/aglomtordf),
- agRecommender which can be used to estimate recommendations using rating data as input (http://appdb.egi.eu/store/software/agrecommender),
- agrovocTagger, a tool with the purpose to index documents with the Agrovoc Thesaurus (http://appdb.egi.eu/store/software/agrovoctagger),
- agTextMining that provides text mining services to datasets (http://appdb.egi.eu/store/software/agtextmining),
- agTriplificator that converts a LOM IEEE file into RDF triples and save them to a 4store triplestore (http://appdb.egi.eu/store/software/agtriplificator),
- JSONCLI, a command line utility that pipe in JSON data for pretty-printing, validation, filtering, and modification (http://appdb.egi.eu/store/software/jsoncli).
Regular maintenance of NGI_AEGIS Helpdesk (https://helpdesk.aegis.rs/) and AEGIS web site (http://www.aegis.rs/) was performed in this quarter. New IP address was assigned to NGI_AEGIS Helpdesk due to the migration of servers at Karlsruhe Institute of Technology (KIT) that are hosting this service to the new network and DNS hosted at IPB was updated accordingly. We continued to participate in testing of GGUS and NGI_AEGIS Helpdesk interface (after each new release of GGUS portal) and GGUS team was informed about issues in synchronization between GGUS and NGI-AEGIS Helpdesk xGUS instance (https://helpdesk.aegis.rs/?mode=ticket_info&ticket_id=123 and https://helpdesk.aegis.rs/?mode=ticket_info&ticket_id=127).
As an extension of our user support activities NGI_AEGIS joined Distributed Competence Centre (https://wiki.egi.eu/wiki/Distributed_Competence_Centre) with the expertise in compute services, MPI, core services and application porting and testing in the area of physics, chemistry, engineering and materials science.
2.2. Plans
Further collaboration with the supported user communities in porting of new applications to Grid and updating of already ported ones, as well as working on advertising of Grid to new users and scientific communities.
2.3. Issues and mitigation
| Issue Description | Mitigation Description |
|---|