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Difference between revisions of "EGI-InSPIRE:Finland-QR8"

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!scope="col"| Quarterly Report Number
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!scope="col"| NGI Name
 
!scope="col"| Partner Name
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| Q8
| NGI_FI
| Finland
| Vera Hansper
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==1. MEETINGS AND DISSEMINATION ==
==1. MEETINGS AND DISSEMINATION == <!--=====GENERAL GUIDELINES FOR ALL EVENTS REPORTED IN THE FOLLOWING SECTIONS:=====
<!--=====GENERAL GUIDELINES FOR ALL EVENTS REPORTED IN THE FOLLOWING SECTIONS:=====
*please do not provide a list of participants, only give the number of people that attended
*please do not provide a list of participants, only give the number of people that attended
*for outcome, please list tangible agreements, decisions instead of listing program points or presentations you made. Otherwise put: “-“
*for outcome, please list tangible agreements, decisions instead of listing program points or presentations you made. Otherwise put: “-“
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**If your presentation is not available online, please send the slides to erika.swiderski@egi.eu.  
**If your presentation is not available online, please send the slides to erika.swiderski@egi.eu.  
Note: Complete the tables below by adding as many rows as needed.  
Note: Complete the tables below by adding as many rows as needed.  
Note: Complete the tables below by adding as many rows as needed. -->
Note: Complete the tables below by adding as many rows as needed. -->  


===1.1. CONFERENCES/WORKSHOPS ORGANISED===
=== 1.1. CONFERENCES/WORKSHOPS ORGANISED ===


{| cellspacing="0" border="1"
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! scope="col" | Date
! Location
! Title
! Participants
! Outcome (Short report &amp; Indico URL)
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| <br>
| <br>
| <br>
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{| border="1" cellspacing="0" cellpadding="2"
=== 1.2. OTHER CONFERENCES/WORKSHOPS ATTENDED  ===
<!-- |+Provided by each SA1 partner. Just report events relevant to SA1 activities.-->
 
{| cellspacing="0" border="1"
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!scope="col"|Date||Location||Title||Participants||Outcome (Short report & Indico URL)  
! scope="col" | Date  
! Location  
! Title  
! Participants  
! Outcome (Short report &amp; Indico URL)
|-
|-
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| 27.03.2012 - 30.03.2012
|
| Munich
|
| EGI Community Forum
|
Per Öster
 
Vera Hansper
 
Pekka Manninen
 
Ulf Tigerstedt
 
Kalle Happonen
 
Kimmo Mattila
 
Johanna Lähti
 
Tapani Kinunen
 
Pinja Koskinen
 
|  
|  
|
CSC presented 3 talks, a poster and held a booth at the Forum. We felt that the booth was quite successful.
 
https://www.egi.eu/indico/conferenceDisplay.py?ovw=True&amp;confId=679
 
|-
|-
|}
| 26.03.2012<br>
| Munich<br>
| OMB<br>
|
Vera Hansper


===1.2. OTHER CONFERENCES/WORKSHOPS ATTENDED===
Ulf Tigerstedt<br>


{| border="1" cellspacing="0" cellpadding="2"
| https://www.egi.eu/indico/conferenceDisplay.py?confId=800<br>
<!-- |+Provided by each SA1 partner. Just report events relevant to SA1 activities.-->
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!scope="col"|Date||Location||Title||Participants||Outcome (Short report & Indico URL)
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|-
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| 26.03.2012<br>
| Munich<br>
| NGI International Liaison (NIL) Meeting
| Johanna Läh<br>
| https://www.egi.eu/indico/conferenceDisplay.py?confId=964
|}
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===1.3. PUBLICATIONS===
===1.3. PUBLICATIONS=== <!--List all publications as bullet points, detailing: Publication title, author(s), journal title, number/issue, date. Also mention any articles published further to interviews given by members of your activity.-->  
<!--List all publications as bullet points, detailing: Publication title, author(s), journal title, number/issue, date. Also mention any articles published further to interviews given by members of your activity.-->


{| border="1" cellspacing="0" cellpadding="2"
{| cellspacing="0" cellpadding="2" border="1"
|-
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!scope="col"|Publication title||Journal / Proceedings title||align="left" |Journal references<br> ''Volume number<br> Issue<br><br>Pages from - to''||align="left" |Authors ''<br>1.<br>2.<br>3.<br>Et al?''
! scope="col" | Publication title  
! Journal / Proceedings title  
! align="left" | Journal references<br> ''Volume number<br> Issue<br><br>Pages from - to''  
! align="left" | Authors ''<br>1.<br>2.<br>3.<br>Et al?''
|-
|-
! scope="col" | Using ARC based grids for NGS read mapping - Grid interface for BWA.
! EMBNet.journal<br>
! align="left" | &nbsp;Accepted for publication<br>
! align="left" | Kimmo Mattila<br>
|}
|}


== 2. ACTIVITY REPORT ==
== 2. ACTIVITY REPORT == <!--''Note: just report activities relevant to this Quarter.''-->  
<!--''Note: just report activities relevant to this Quarter.''-->
 
=== 2.1. Progress Summary  ===


===2.1. Progress Summary===
Following the successful installation and testing of the new hardware at the upcoming FGI (Finnish Grid Infrastructure) sites, the last few months have been spent in deploying software and setting up the sites for local and grid use.&nbsp; On the 25th of April,&nbsp; some grid jobs were successfully submitted, and the EGI certification of the Finnish sites has now begun in earnest.  
===2.2. Main Achievements===


=== 2.2. Main Achievements  ===


===2.3. Issues and mitigation===
=== 2.3. Issues and mitigation ===


{| border="1" cellspacing="0" cellpadding="2"
{| cellspacing="0" cellpadding="2" border="1"
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|-
!scope="col"| Issue Description
! scope="col" | Issue Description  
!scope="col"| Mitigation Description
! scope="col" | Mitigation Description
|-
|-
! scope="col" |
Problem with EA effort as UMD releases fall behind EMI, which are behind NorduGrid releases
! scope="col" |
Production infra uses NorduGrid releases. We use EMI and maybe UMD only on testing hardware.
|}
|}


Latest revision as of 15:13, 9 January 2015

EGI Inspire Main page


Inspire reports menu: Home • SA1 weekly Reports • SA1 Task QR Reports • NGI QR Reports • NGI QR User support Reports



Quarterly Report Number NGI Name Partner Name Author
Q8 NGI_FI Finland Vera Hansper


1. MEETINGS AND DISSEMINATION

1.1. CONFERENCES/WORKSHOPS ORGANISED

Date Location Title Participants Outcome (Short report & Indico URL)





1.2. OTHER CONFERENCES/WORKSHOPS ATTENDED

Date Location Title Participants Outcome (Short report & Indico URL)
27.03.2012 - 30.03.2012 Munich EGI Community Forum

Per Öster

Vera Hansper

Pekka Manninen

Ulf Tigerstedt

Kalle Happonen

Kimmo Mattila

Johanna Lähti

Tapani Kinunen

Pinja Koskinen

CSC presented 3 talks, a poster and held a booth at the Forum. We felt that the booth was quite successful.

https://www.egi.eu/indico/conferenceDisplay.py?ovw=True&confId=679

26.03.2012
 Munich
 OMB

Vera Hansper

Ulf Tigerstedt

 https://www.egi.eu/indico/conferenceDisplay.py?confId=800
26.03.2012
 Munich
 NGI International Liaison (NIL) Meeting Johanna Läh
 https://www.egi.eu/indico/conferenceDisplay.py?confId=964


1.3. PUBLICATIONS

Publication title Journal / Proceedings title Journal references
Volume number
Issue

Pages from - to 		Authors
1.
2.
3.
Et al?
Using ARC based grids for NGS read mapping - Grid interface for BWA. EMBNet.journal
  Accepted for publication
 Kimmo Mattila

2. ACTIVITY REPORT

2.1. Progress Summary

Following the successful installation and testing of the new hardware at the upcoming FGI (Finnish Grid Infrastructure) sites, the last few months have been spent in deploying software and setting up the sites for local and grid use.  On the 25th of April,  some grid jobs were successfully submitted, and the EGI certification of the Finnish sites has now begun in earnest.

2.2. Main Achievements

2.3. Issues and mitigation

Issue Description Mitigation Description

Problem with EA effort as UMD releases fall behind EMI, which are behind NorduGrid releases

Production infra uses NorduGrid releases. We use EMI and maybe UMD only on testing hardware.


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