VT Scientific Publications Repository Implementation Resources

From EGIWiki
Jump to: navigation, search
VT Scientific Publications Repository Implementation Tasks Meetings & Actions Resources

Results from mining


User Stories


  1. Technologist: a person who develop technologies to innovate EGI
  2. Researcher: a person who perform digital research using ICT infrastructures such as EGI
  3. Data curator: a person from EGI who will receive notifications for each new publication associated to EGI and can verify/curate it (we can find another name for this role)
  4. Viewer: a user of the portal with no login access


  1. Researcher/Technologist: I want to login into the OpenAIRE portal using my EGI credential
    it can rely on federated identity, e.g. SAML (see this initiative https://refeds.org/)
  2. Researcher/Technologist: when logged in the OpenAIRE portal, I want to upload metadata related to my publication (and specify if it is open access, embargo access, closed access)
  3. Researcher: when logged in the OpenAIRE portal, I want to claim that the work of my publication used EGI
  4. Researcher: when logged in the OpenAIRE portal, I want to claim that the work of my publication is associated to a certain Virtual Organisation
  5. Researcher: when logged in the OpenAIRE portal, I want to claim that the work of my publication is associated to a certain EGI scientific discipline
  6. Technologist: when logged in the OpenAIRE portal, I want to claim that the work of my publication supported EGI
  7. Data curator: I want to receive a notification for each new publication associated to EGI so that I can verify and curate it
  8. Viewer: I want to list all the publications associated to EGI
  9. Viewer: I want to list all the publications associated to a certain virtual organisation
  10. Viewer: I want to list all the publications associated to a certain EGI scientific discipline
    EGI is finalising a new scientific discipline classification (https://wiki.egi.eu/wiki/VT_Scientific_Discipline_Classification_Classification)
    each virtual organisation (VO) will be associated to one or more scientific disciplines (static association)

Evolution of Scientific Publications Metadata

Publishers are evolving their metadata structure to track funding/sponsorship of research. Examples are:

  1. Funding field: e.g.: http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0062944
  2. Acknowledgment field: e.g.: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3550521/

Type of relationships

Through OpenAIRE, the following types of relationships are willingly to be automatically/manually established:

  • Publication "using EGI"
  • Publication "using NGI:XX"
  • Publication "supporting EGI"
  • Publication "related to VO:XYZ"
  • Publication "related to EGI Scientific Discipline:XYZ" (to be confirmed)

Acknowledgment Statements

This section collects the acknowledgement statements that have been used by EC projects and EGI Virtual Organisations in scientific publications. They can be used to create rules to mine publications and link them to EGI.

Acknowledgment Statements
Organisation Name Organisation Type Grant ID (if applies) Suggested Acknowledgment Relationship to be extracted
WeNMR EC Project 261572 "The WeNMR project (European FP7 e-Infrastructure grant, contract no. 261572, www.wenmr.eu), supported by the European Grid Initiative (EGI) through the national GRID Initiatives of Belgium, France, Italy, Germany, the Netherlands (via the Dutch BiG Grid project), Portugal, Spain, UK, South Africa, Taiwan and the Latin America GRID infrastructure via the Gisela project is acknowledged for the use of web portals, computing and storage facilities." and the following article describing the WeNMR portals should be cited:

Wassenaar et al. (2012). WeNMR: Structural Biology on the Grid.J. Grid. Comp., 10:743-767. (List of publications http://www.wenmr.eu/wenmr/publications-acknowledging-wenmr)

using EGI, using NGI:DE, using NGI:BE, using NGI:IT, using NGI:PT, using NGI:ES, using NGI:UK, using NGI:FR, related to VO:enmr.eu
EGI-InSPIRE EC Project 261323 The authors acknowledge the use of resources provided by the European Grid Infrastructure. For more information, please reference the EGI-InSPIRE paper (http://go.egi.eu/pdnon). supporting EGI
ALICE Virtual Organisation n/a The ALICE collaboration gratefully acknowledges the resources and support provided by all Grid centres and the Worldwide LHC Computing Grid (WLCG) collaboration. using EGI, related to VO:alice
ATLAS Virtual Organisation n/a The crucial computing support from all WLCG partners is acknowledged gratefully, in particular from CERN and the ATLAS Tier-1 facilities at TRIUMF (Canada), NDGF (Denmark, Norway, Sweden), CCIN2P3 (France), KIT/GridKA (Germany), INFN-CNAF (Italy), NL-T1 (Netherlands), PIC (Spain), ASGC (Taiwan), RAL (UK) and BNL (USA) and in the Tier-2 facilities worldwide using EGI, related to VO:atlas, using NGI:FR, using NGI:DE, using NGI:IT, using NGI:NL, using NGI:ES, using NGI:UK
CMS Virtual Organisation n/a We thank the computing centres in the Worldwide LHC computing Grid for the provisioning and excellent performance of computing infrastructure essential to our analyses. using EGI, related to VO:cms
LHCb Virtual Organisation n/a The Tier1 computing centres are supported by IN2P3 (France), KIT and BMBF (Germany), INFN (Italy), NWO and SURF (The Netherlands), PIC (Spain), GridPP (United Kingdom). We are thankful for the computing resources put at our disposal by Yandex LLC (Russia), as well as to the communities behind the multiple open source software packages that we depend on. using EGI, related to VO:lhcb
EMI EC Project 261611 The research results of the EMI project are co-funded by the European Commission under the FP7 Collaborative Projects Grant Agreement Nr. 261611 supporting EGI
NA62 Virtual Organisation n/a We acknowledge the use of Grid computing resources deployed and operated by (GridPP in the UK) or (the worldwide LHC computing Grid). using EGI, related to VO:NA62
auger Virtual Organisation n/a no statement defined using EGI
vo.metacentrum.cz Virtual Organisation n/a The access to computing and storage facilities owned by parties and projects contributing to the National Grid Infrastructure MetaCentrum, provided under the programme "Projects of Large Infrastructure for Research, Development, and Innovations" (LM2010005) is highly appreciated/acknowledged. using EGI, related to VO:vo.metacentrum.cz
glast.org Virtual Organisation n/a We would like to thank the INFN GRID Data Centers of ..., ..., ..., and ..., ... using EGI, using NGI:IT, related to VO:glast.org
biomed Virtual Organisation n/a "Results obtained in this paper were computed on the biomed virtual organization of the European Grid Infrastructure (http://www.egi.eu). We thank the European Grid Infrastructure and its supporting National Grid Initiatives for providing the technical support, computing and storage facilities." (list of publications not up-to-date: http://lsgc.org/en/Biomed:publications) using EGI; using NGI:BG, using NGI:HR, NGI:CY, BGI:FR, NGI:DE, NGI:GR, NGI:IT, NGI:MK, NGI:MD, NGI:NL, NGI:PT, NGI:PL, NGI:RU, NGI:SK, NGI:SP, NGI:TR, NGI:UK; related to VO:biomed
DREAM Virtual Organisation n/a n/a (list of publications: http://highenergy.phys.ttu.edu/dream/results/publications/publications.html) using EGI, using NGI:IT. related to VO:DREAM
t2k.org Virtual Organisation n/a n/a (list of publications: http://t2k-experiment.org/publications/)
HONE Virtual Organisation n/a We thank to all partners contributing to the WLCG computing infrastructure for their support for the H1 Collaboration (list of publications: http://www-h1.desy.de/h1/www/publications/H1publication.short_list.html#YEAR2013) using EGI; using NGI:CH,GE,FR,PL,RO,SK,UK; related to VO:HONE
icecube Virtual Organisation n/a They suggest to name in addtion to DFG (Deutsche Forschungsgemeinschaft) or NSF (National Science Foundation) also EGI resouces/help. using, EGI; related to VO:icecube
MAGIC Virtual Organisation n/a n/a (List of publications http://magic.mppmu.mpg.de/publications/articles/index.html) using EGI; related to VO:MAGIC
ESR Virtual Organisation n/a n/a (List of publications http://www.euearthsciencegrid.org/publications) using EGI; related to VO:ESR
CALICE Virtual Organisation n/a The support on the computing elements (CE) from all the worldwide GRID, and the support on the storage elements (SE), in particular Germany DESY GRID SE and France Lyon SE, are acknowledged gratefully. (List of publications https://twiki.cern.ch/twiki/bin/view/CALICE/CalicePapers) using EGI, using NGI:DE, related to VO:CALICE
NGI:NL NGI n/a This work is part of the programme of BiG Grid, the Dutch e-Science Grid, which is financially supported by the Nederlandse Organisatie voor Wetenschappelijk Onderzoek (Netherlands Organisation for Scientific Research, NWO). using EGI, using NGI:NL
NGI:NL NGI n/a This work was carried out on the Dutch National e-infrastructure with the support of SURF Foundation. using EGI, using NGI:NL
NGI:IT NGI n/a The research leading to the results presented in this paper has been possible thanks to the grid resources and services provided by the European Grid Infrastructure (EGI) and the Italian Grid Infrastructure (IGI).For more information, please reference the EGI-InSPIRE paper (http://go.egi.eu/pdnon) and the IGI web server (http://www.italiangrid.it) using EGI, using NGI:IT
NGI:TR NGI n/a The numerical calculations reported in this paper were fully/partially performed at TUBITAK ULAKBIM, High Performance and Grid Computing Center (TRUBA resources).  using EGI, using NGI:TR
NGI:PT NGI n/a This work makes use of results produced with the support of the Portuguese National Grid Initiative. More information in https://wiki.ncg.ingrid.pt using EGI, using NGI:PT
NGI:GR NGI n/a No standard text recommended (List of publications: http://www.hellasgrid.gr/publications/) using EGI, using NGI:GR
NGI:FR NGI n/a The authors acknowledge the support of France Grilles for providing computing resources on the French National Grid Infrastructure. using EGI, using NGI:FR
NGI:HU NGI n/a MTA Wigner FK RMI Hungrid infrastruktúrája, http://grid.kfki.hu/hungrid (list of publications: http://grid.kfki.hu/hungrid/publication.html) using EGI, using NGI:HU

Generic Rules

In this section, we report the terms to use in generic rules to discover publications potentially linked to EGI.

The NGIs listed below were selected (for the purposes of this VT) for the uniqueness of their name.

Terms Relationship to be extracted
"European Grid Infrastructure" using EGI
"European Grid Initiative" using EGI
"National Grid Infrastructure" using EGI
"National Grid Initiative" using EGI
"WLCG" using EGI
"France Grilles" using EGI, using NGI:FR
"Metacentrum" using EGI, using NGI:CZ
"Swiss National Grid Association" using EGI, using NGI:CH
"Ibergrid" "NGI-ES" using EGI, using NGI:ES and/or NG:PT
"BIGGrid" "The Dutch e-Science Grid" using EGI, using NGI:NL
"PL-Grid" "Polish National Grid Initiative" using EGI, using NGI:PL
"TRUBA" "Turkish National Grid Initiative" using EGI, using NGI:TR
"ISRAGRID" "Israel National Infrastructure for Grid and Cloud Computing" using EGI, using NGI:IL