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Difference between revisions of "FedCloudRSAT"
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RSAT (Regulatory Sequence Analysis Tools) offers a series of tools dedicated to the detection of regulatory signals in non-coding sequences. The only input required is a list of genes of interest (e.g. a family of co-regulated genes). From this information, you can retrieve the upstream sequences over a desired distance, discover putative regulatory signals, search the matching positions for these signals in your original dataset or in whole genomes, and display the results graphically in the form of a feature map. Each tool is presented as a form to fill. For each form, a manual page provides detailed information about the parameters. | | |||
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Revision as of 18:42, 12 December 2014
General Information
- Status: Preparatory
- Start Date: 08/10/2014
- End Date: -
- EGI.eu contact: Nuno Ferreira / nuno.ferreira@egi.eu, Diego Scardaci / diego.scardaci@egi.eu
- External contact: Jacques.van-Helden / Jacques.van-Helden@univ-amu.fr
Short Description
RSAT (Regulatory Sequence Analysis Tools) offers a series of tools dedicated to the detection of regulatory signals in non-coding sequences. The only input required is a list of genes of interest (e.g. a family of co-regulated genes). From this information, you can retrieve the upstream sequences over a desired distance, discover putative regulatory signals, search the matching positions for these signals in your original dataset or in whole genomes, and display the results graphically in the form of a feature map. Each tool is presented as a form to fill. For each form, a manual page provides detailed information about the parameters.