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FedCloudChipster

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Revision as of 17:04, 1 October 2014 by Scardaci (talk | contribs)
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General Information

  • Status: active
  • Start Date: 19/09/2014
  • End Date: -
  • EGI.eu contact: Nuno Ferreira / nuno.ferreira@egi.eu, Diego Scardaci / diego.scardaci@egi.eu
  • External contact: Aleksi Kallio / chipster@csc.fi

Short Description

Chipster is a user-friendly analysis software for high-throughput data. It contains over 300 analysis tools for next generation sequencing (NGS), microarray, proteomics and sequence data. Chipster's client software uses Java Web Start to install itself automatically, and it connects to computing servers for the actual analysis. Chipster is open source and the server environment is available as a virtual machine image.

Use Case

Use case

Use case 1: deploy Chipster on the EGI Federated Cloud.

Requirements:

  • 2 VMs with 4/8 GB of RAM and 2 Cores
  • Enough storage space to host the VM image (currently it's about 200 GB)
  • Interested in scalability mechanism.

Additional Files

Chipster tool development and server administration