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Difference between revisions of "EGI User Start Guide"

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|- style="background-color: lightgray;"
|- style="background-color: lightgray;"
| '''1'''  
| '''1'''  
| '''[[EGI User Start Guide Acronyms]]
| '''[[EGI User Start Guide Acronyms| Acronyms]]'''  
| '''<big>[http://www.eu-egee.org/fileadmin/documents/UseCases/Acronyms.html Acronym Reference Page]</big>'''<big>[http://www.eu-egee.org/fileadmin/documents/UseCases/Acronyms.html ] 
| A list of the principal acronyms for terms that are used in this Guide.
| The EGI [[Operations Manuals]] are technical prescriptive documents that provide guidelines
|- style="background-color: lightgray;"
|- style="background-color: lightgray;"
| '''2'''  
| '''2'''  
| '''<big>[http://www.eu-egee.org/fileadmin/documents/UseCases/GetCertificate.html Getting a Certificate]</big>'''<big>[http://www.eu-egee.org/fileadmin/documents/UseCases/GetCertificate.html ] </big>  
|'''[[EGI User Start Guide Getting Certificate| Getting a Certificate]]'''
| '''<big>[http://www.eu-egee.org/fileadmin/documents/UseCases/GetCertificate.html Getting a Certificate]</big>'''<big>[http://www.eu-egee.org/fileadmin/documents/UseCases/GetCertificate.html] </big>  
| EGI [[Operations Procedures]] are presc
| EGI [[Operations Procedures]] are presc
|- style="background: none repeat scroll 0% 0% lightgray;"
|- style="background: none repeat scroll 0% 0% lightgray;"
| '''3'''  
| '''3'''  
| <big>[http://www.eu-egee.org/fileadmin/documents/UseCases/JoinVO.html '''Registering with a Virtual Organisation''']</big>'''<big></big>'''
| <big>[http://www.eu-egee.org/fileadmin/documents/UseCases/JoinVO.html '''Registering with a Virtual Organisation''']</big>'''<big></big>'''  
| A collection of Training Guides relevant to Operations.
| A collection of Training Guides relevant to Operations.
|- style="background-color: lightgray;"
|- style="background-color: lightgray;"
| '''4'''  
| '''4'''  
| <big>[http://www.eu-egee.org/fileadmin/documents/UseCases/ProxyCerts.html '''Proxy Certificates''']</big>'''<big></big>'''
| <big>[http://www.eu-egee.org/fileadmin/documents/UseCases/ProxyCerts.html '''Proxy Certificates''']</big>'''<big></big>'''  
| *[https://documents.egi.eu/document/31 Resource Centre (RC) Operational Level Agreement] ([[Resource Centre OLA: Release Notes|release notes]])
| *[https://documents.egi.eu/document/31 Resource Centre (RC) Operational Level Agreement] ([[Resource Centre OLA: Release Notes|release notes]])
|- style="background-color: lightgray;"
|- style="background-color: lightgray;"
| '''5'''  
| '''5'''  
| <big>[http://www.eu-egee.org/fileadmin/documents/UseCases/ProxyRenewal.html '''Proxy Renewal with MyProxy''']</big>'''<big></big>'''
| <big>[http://www.eu-egee.org/fileadmin/documents/UseCases/ProxyRenewal.html '''Proxy Renewal with MyProxy''']</big>'''<big></big>'''  
| *Information about DTEAM and OPS VOs, standards relevant to operations
| *Information about DTEAM and OPS VOs, standards relevant to operations
|- style="background-color: lightgray;"
|- style="background-color: lightgray;"
| '''6'''  
| '''6'''  
| <big>[http://www.eu-egee.org/fileadmin/documents/UseCases/UserInterfaceAccount.html '''Getting an Account on a User Interface''']</big>'''<big></big>'''
| <big>[http://www.eu-egee.org/fileadmin/documents/UseCases/UserInterfaceAccount.html '''Getting an Account on a User Interface''']</big>'''<big></big>'''  
|  
|  
*Grid middleware [[SVG:Advisories|advisories]] (SVG)<br>
*Grid middleware [[SVG:Advisories|advisories]] (SVG)<br>
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|- style="background-color: lightgray;"
|- style="background-color: lightgray;"
| '''7'''<br>  
| '''7'''<br>  
| '''<big>[http://www.eu-egee.org/fileadmin/documents/UseCases/SetupUIEnv.html Setting up the UI Environment]</big>'''<big>[http://www.eu-egee.org/fileadmin/documents/UseCases/SetupUIEnv.html ] </big>  
| '''<big>[http://www.eu-egee.org/fileadmin/documents/UseCases/SetupUIEnv.html Setting up the UI Environment]</big>'''<big>[http://www.eu-egee.org/fileadmin/documents/UseCases/SetupUIEnv.html] </big>  
|  
|  
*Information about DTEAM and OPS VOs, standards relevant to operations
*Information about DTEAM and OPS VOs, standards relevant to operations
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|- style="background-color: lightgray;"
|- style="background-color: lightgray;"
| '''8'''<br>  
| '''8'''<br>  
| <big>[http://www.eu-egee.org/fileadmin/documents/UseCases/SimpleJobCycle.html '''Simple Job Cycle''']</big>'''<big></big>'''
| <big>[http://www.eu-egee.org/fileadmin/documents/UseCases/SimpleJobCycle.html '''Simple Job Cycle''']</big>'''<big></big>'''  
|  
|  
*Grid middleware [[SVG:Advisories|advisories]] (SVG)
*Grid middleware [[SVG:Advisories|advisories]] (SVG)
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|- style="background-color: lightgray;"
|- style="background-color: lightgray;"
| '''9'''<br>  
| '''9'''<br>  
| <big>[http://www.eu-egee.org/fileadmin/documents/UseCases/BasicDataMgt.html '''Basic Data Management''']</big>'''<big></big>'''
| <big>[http://www.eu-egee.org/fileadmin/documents/UseCases/BasicDataMgt.html '''Basic Data Management''']</big>'''<big></big>'''  
|  
|  
*Information about DTEAM and OPS VOs, standards relevant to operations
*Information about DTEAM and OPS VOs, standards relevant to operations
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| '''10'''<br>  
| '''10'''<br>  
| <big>[http://www.eu-egee.org/fileadmin/documents/UseCases/QueryingInfoSystem.html '''Querying the Information System''']</big>'''<big></big>'''
| <big>[http://www.eu-egee.org/fileadmin/documents/UseCases/QueryingInfoSystem.html '''Querying the Information System''']</big>'''<big></big>'''  
|  
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*Grid middleware [[SVG:Advisories|advisories]] (SVG)<br>
*Grid middleware [[SVG:Advisories|advisories]] (SVG)<br>
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| '''11'''<br>  
| '''11'''<br>  
| <big>[http://www.eu-egee.org/fileadmin/documents/UseCases/ServiceDiscovery.html '''Service Discovery''']</big>'''<big></big>'''
| <big>[http://www.eu-egee.org/fileadmin/documents/UseCases/ServiceDiscovery.html '''Service Discovery''']</big>'''<big></big>'''  
|  
|  
*Information about DTEAM and OPS VOs, standards relevant to operations
*Information about DTEAM and OPS VOs, standards relevant to operations
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|- style="background-color: lightgray;"
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| '''12'''<br>  
| '''12'''<br>  
| <big>[http://www.eu-egee.org/fileadmin/documents/UseCases/InstallUI.html '''Installing a gLite User Interface''']</big>'''<big></big>'''
| <big>[http://www.eu-egee.org/fileadmin/documents/UseCases/InstallUI.html '''Installing a gLite User Interface''']</big>'''<big></big>'''  
|  
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*Grid middleware [[SVG:Advisories|advisories]] (SVG)<br>
*Grid middleware [[SVG:Advisories|advisories]] (SVG)<br>
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| '''13'''<br>  
| '''13'''<br>  
| <big>[http://www.eu-egee.org/fileadmin/documents/UseCases/SWInstallation.html '''VO Software Installation''']</big>'''<big></big>'''
| <big>[http://www.eu-egee.org/fileadmin/documents/UseCases/SWInstallation.html '''VO Software Installation''']</big>'''<big></big>'''  
|  
|  
*Information about DTEAM and OPS VOs, standards relevant to operati
*Information about DTEAM and OPS VOs, standards relevant to operati
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| '''14'''<br>  
| '''14'''<br>  
| <big>[http://www.eu-egee.org/fileadmin/documents/UseCases/MPIJobs.html '''MPI Jobs''']</big>'''<big></big>'''
| <big>[http://www.eu-egee.org/fileadmin/documents/UseCases/MPIJobs.html '''MPI Jobs''']</big>'''<big></big>'''  
|  
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*Grid middleware [[SVG:Advisories|advisories]] (SV
*Grid middleware [[SVG:Advisories|advisories]] (SV
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| '''15'''<br>  
| '''15'''<br>  
| <big>[http://www.eu-egee.org/fileadmin/documents/UseCases/MonitWithRGMA.html '''Job Monitoring (via R-GMA)''']</big>'''<big></big>'''
| <big>[http://www.eu-egee.org/fileadmin/documents/UseCases/MonitWithRGMA.html '''Job Monitoring (via R-GMA)''']</big>'''<big></big>'''  
|  
|  
*Information about DTEAM and OPS VOs, standards relevant to operatio
*Information about DTEAM and OPS VOs, standards relevant to operatio
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| '''16'''<br>  
| '''16'''<br>  
| <big>[http://www.eu-egee.org/fileadmin/documents/UseCases/UsingAMGA.html '''Using AMGA Metadata Catalog''']</big>'''<big></big>'''
| <big>[http://www.eu-egee.org/fileadmin/documents/UseCases/UsingAMGA.html '''Using AMGA Metadata Catalog''']</big>'''<big></big>'''  
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*Grid middleware [[SVG:Advisories|advisories]] (SVG)<br>
*Grid middleware [[SVG:Advisories|advisories]] (SVG)<br>
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| '''17'''<br>  
| '''17'''<br>  
| <big>[http://www.eu-egee.org/fileadmin/documents/UseCases/Advancedldapsearch.html '''Using LDAP Search''']</big>'''<big></big>'''
| <big>[http://www.eu-egee.org/fileadmin/documents/UseCases/Advancedldapsearch.html '''Using LDAP Search''']</big>'''<big></big>'''  
|  
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*Information about DTEAM and OPS VOs, standards relevant to operation
*Information about DTEAM and OPS VOs, standards relevant to operation
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| '''18'''<br>  
| '''18'''<br>  
| <big>[http://www.eu-egee.org/fileadmin/documents/UseCases/MedicalDataManagement.html '''The Medical Data Management''']</big>'''<big></big>'''
| <big>[http://www.eu-egee.org/fileadmin/documents/UseCases/MedicalDataManagement.html '''The Medical Data Management''']</big>'''<big></big>'''  
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*Grid middleware [[SVG:Advisories|advisories]] (SVG)
*Grid middleware [[SVG:Advisories|advisories]] (SVG)
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| '''19'''<br>  
| '''19'''<br>  
| <big>[http://www.eu-egee.org/fileadmin/documents/UseCases/Wisdom.html '''Wisdom Data Manager''']</big>'''<big></big>'''
| <big>[http://www.eu-egee.org/fileadmin/documents/UseCases/Wisdom.html '''Wisdom Data Manager''']</big>'''<big></big>'''  
|  
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*Information about DTEAM and OPS VOs, standards relevant to operation
*Information about DTEAM and OPS VOs, standards relevant to operation
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| '''20'''<br>  
| '''20'''<br>  
| <big>[http://www.eu-egee.org/fileadmin/documents/UseCases/Bioinformatics.html '''The Bioinformatics Data Management''']</big>'''<big></big>'''
| <big>[http://www.eu-egee.org/fileadmin/documents/UseCases/Bioinformatics.html '''The Bioinformatics Data Management''']</big>'''<big></big>'''  
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*Grid middleware [[SVG:Advisories|advisories]] (SVG)
*Grid middleware [[SVG:Advisories|advisories]] (SVG)
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| '''21'''  
| '''21'''  
| <big>[http://www.eu-egee.org/fileadmin/documents/UseCases/Pilotjobs.html '''Pilot Jobs''']</big>'''<big></big>'''
| <big>[http://www.eu-egee.org/fileadmin/documents/UseCases/Pilotjobs.html '''Pilot Jobs''']</big>'''<big></big>'''  
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*Information about DTEAM and OPS VOs, standards relevant to operations
*Information about DTEAM and OPS VOs, standards relevant to operations
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| '''22'''<br>  
| '''22'''<br>  
| <big>[http://www.eu-egee.org/fileadmin/documents/UseCases/Astrophysics.html '''Astrophysics: analysis of CMB data''']</big>'''<big></big>'''
| <big>[http://www.eu-egee.org/fileadmin/documents/UseCases/Astrophysics.html '''Astrophysics: analysis of CMB data''']</big>'''<big></big>'''  
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*Grid middleware [[SVG:Advisories|advisories]] (SVG)
*Grid middleware [[SVG:Advisories|advisories]] (SVG)

Revision as of 18:20, 18 December 2012

Main EGI.eu operations services Support Documentation Tools Activities Performance Technology Catch-all Services Resource Allocation Security


Documentation menu: Home Manuals Procedures Training Other Contact For: VO managers Administrators


Introduction

The EGI User Start Guide provides a list of instructions how to start and use EGI Infrastructure.

If the reader is new to the Grid and its concepts and wants to get started with understanding, writing and running jobs as quickly and efficiently as possible, it is strongly recommended that the chapters are followed in sequence, as they appear on the Table.

Chapters from 1 to 9 go through all the basics for setting up the user to be ready to use the Grid. Chapters from 10 to 18 are for advanced users and feature detailed, in-depth information on more complex concepts and operations. The last chapters (from 19 to 22) describe some particular Life Sciences community use cases about Data Management facilities.

Assumptions

A basic familiarity with the Unix OS commands are presumed, since all commands will be done from a Unix-based console. This includes Grid commands as well as local machine commands.


1 Acronyms A list of the principal acronyms for terms that are used in this Guide.
2 Getting a Certificate Getting a Certificate[1] EGI Operations Procedures are presc
3 Registering with a Virtual Organisation A collection of Training Guides relevant to Operations.
4 Proxy Certificates *Resource Centre (RC) Operational Level Agreement (release notes)
5 Proxy Renewal with MyProxy *Information about DTEAM and OPS VOs, standards relevant to operations
6 Getting an Account on a User Interface
7
Setting up the UI Environment[2]
  • Information about DTEAM and OPS VOs, standards relevant to operations
8
Simple Job Cycle
9
Basic Data Management
  • Information about DTEAM and OPS VOs, standards relevant to operations
10
Querying the Information System
11
Service Discovery
  • Information about DTEAM and OPS VOs, standards relevant to operations
12
Installing a gLite User Interface
13
VO Software Installation
  • Information about DTEAM and OPS VOs, standards relevant to operati
14
MPI Jobs
15
Job Monitoring (via R-GMA)
  • Information about DTEAM and OPS VOs, standards relevant to operatio
16
Using AMGA Metadata Catalog
17
Using LDAP Search
  • Information about DTEAM and OPS VOs, standards relevant to operation
18
The Medical Data Management
19
Wisdom Data Manager
  • Information about DTEAM and OPS VOs, standards relevant to operation
20
The Bioinformatics Data Management
21 Pilot Jobs
  • Information about DTEAM and OPS VOs, standards relevant to operations
22
Astrophysics: analysis of CMB data