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Difference between revisions of "EGI-InSPIRE:Finland-QR10"

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|| 17.-21.9.2012|| Prague, Czech||EGI Technical Forum 2012||Luis Alves, Ulf Tigerstedt, Johanna Lätti and Kalle Happonen ||
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!scope="col"|Publication title||Journal / Proceedings title||align="left" |Journal references<br> ''Volume number<br> Issue<br><br>Pages from - to''||align="left" |Authors ''<br>1.<br>2.<br>3.<br>Et al?''
!scope="col"|Publication title||Journal / Proceedings title||align="left" |Journal references<br> ''Volume number<br> Issue<br><br>Pages from - to''||align="left" |Authors ''<br>1.<br>2.<br>3.<br>Et al?''
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|| Using ARC based grids for NGS read mapping - Grid interface for BWA ||  EMBnet Journal || Volume 18.1 || K. Mattila ||
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===2.1. Progress Summary===
===2.1. Progress Summary===
===2.2. Main Achievements===
===2.2. Main Achievements===
The Finnish NGI promoted the national grid infrastructure by having a tour called “FGI Road Show”. During this
tour the grid experts of CSC visited in seven university campuses around Finland.  All the events included a
seminar session where the Finnish grid services were introduced for the audience. The seminar was followed by a
hands on session during which the FGI experts of CSC helped the customers to test FGI grid environment and solve
FGI related practical problems  ( e.g. obtaining certificates and installing the ARC middleware). In total about
100 potential new grid users participated to the events.  The promotion tour together with other outreach
activities has increased the size of the fgi.csc.fi VO up to 134 members.
Other user support activities:
- The documentation of the national grid environment was improved by updating the FGI user pages
(https://fgi.csc.fj) and the FGI user manual (
https://confluence.csc.fi/download/attachments/10782989/FGI_guide_7.9.2012.pdf).
- Several new Runtime Environments are added and documented to the FGI grid environment ( Including e.g. The
Matlab compiler runtime environment).
- An article, describing the ARC middleware based grid interface of BWA was published in EMBnet journal Volume
18.1  (https://journal.embnet.org).
- FGI Demonstration Virtual Machine was created to facilitate Windows users to the access FGI grid environment.





Latest revision as of 15:47, 6 January 2015

EGI Inspire Main page


Inspire reports menu: Home SA1 weekly Reports SA1 Task QR Reports NGI QR Reports NGI QR User support Reports



Quarterly Report Number NGI Name Partner Name Author


1. MEETINGS AND DISSEMINATION

1.1. CONFERENCES/WORKSHOPS ORGANISED

Date Location Title Participants Outcome (Short report & Indico URL)

1.2. OTHER CONFERENCES/WORKSHOPS ATTENDED

Date Location Title Participants Outcome (Short report & Indico URL)
17.-21.9.2012 Prague, Czech EGI Technical Forum 2012 Luis Alves, Ulf Tigerstedt, Johanna Lätti and Kalle Happonen


1.3. PUBLICATIONS

Publication title Journal / Proceedings title Journal references
Volume number
Issue

Pages from - to
Authors
1.
2.
3.
Et al?
Using ARC based grids for NGS read mapping - Grid interface for BWA EMBnet Journal Volume 18.1 K. Mattila

2. ACTIVITY REPORT

2.1. Progress Summary

2.2. Main Achievements

The Finnish NGI promoted the national grid infrastructure by having a tour called “FGI Road Show”. During this tour the grid experts of CSC visited in seven university campuses around Finland. All the events included a seminar session where the Finnish grid services were introduced for the audience. The seminar was followed by a hands on session during which the FGI experts of CSC helped the customers to test FGI grid environment and solve FGI related practical problems ( e.g. obtaining certificates and installing the ARC middleware). In total about 100 potential new grid users participated to the events. The promotion tour together with other outreach activities has increased the size of the fgi.csc.fi VO up to 134 members.

Other user support activities: - The documentation of the national grid environment was improved by updating the FGI user pages (https://fgi.csc.fj) and the FGI user manual ( https://confluence.csc.fi/download/attachments/10782989/FGI_guide_7.9.2012.pdf).

- Several new Runtime Environments are added and documented to the FGI grid environment ( Including e.g. The Matlab compiler runtime environment).

- An article, describing the ARC middleware based grid interface of BWA was published in EMBnet journal Volume 18.1 (https://journal.embnet.org).

- FGI Demonstration Virtual Machine was created to facilitate Windows users to the access FGI grid environment.


2.3. Issues and mitigation

Issue Description Mitigation Description