Difference between revisions of "Chipster"

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= Access Chipster with CSG =
 
 
 
== Introduction ==
 
This guide is intended for researchers who want to use [http://chipster.csc.fi/ Chipster], is a user-friendly software for analyzing high-throughput data such as NGS and microarrays, in the cloud-based resources provided by [https://wiki.egi.eu/wiki/Long-tail_of_science EGI].
 
 
 
The Chipster server configured at [https://appdb.egi.eu/store/site/cesga CESGA] offers:
 
* 4 vCPU cores,
 
* 16GB of RAM,
 
* 200GB in /data
 
* Software and tools (v3.11.2) are in /cvmfs/chipster.egi.eu/
 
 
 
This how-to has been tested in the [https://access.egi.eu/ EGI Applications on Demand Infrastructure].
 
 
 
The only pre-requisite to access and use the Chipster testbed is to be a member of this infrastructure.
 
 
 
== Objectives ==
 
In this guide we will show how to
 
* Create a temporary Chipster account to access the testbed;
 
* Use the temporary account to access and run the bio-informatics applications.
 
 
 
== How to access the Chipster testbed ==
 
To access the Chipster tested, a valid account is needed.
 
 
 
* If the user already HAS a valid user name and password for this Chipster service, he/she can launch the Chipster client from the [http://193.144.35.148:8081/chipster.jnlp Chipster]
 
 
 
* If the user did NOT use this Chipster server before or if username and password have expired, please use this [https://csgf.egi.eu/run-chipster link] to define a nickname and password for the Chipster server (see next section for more details).
 
** The password will be valid for one month.
 
 
 
== How to create a temporary account with CSG ==
 
In this section we will show how to create this temporary account using the JSR 286 portlet available in the Catania Science Portal.
 
 
 
To access the portlet to create/renew the temporary portlet click [https://csgf.egi.eu/run-chipster here] and provide the needed information in the second accordion as showed below:
 

Latest revision as of 15:16, 23 May 2019

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