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Difference between revisions of "Chipster"

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== Create a temporary Chipster account with CSG ==
== Create a temporary Chipster account with CSG ==
To access the Chipster tested, a valid account is needed.
To access the Chipster tested, a valid account is needed.
If you already have a valid user name and password for this Chipster service you can launch the Chipster client from the [link below http://193.144.35.148:8081/chipster.jnlp].
 
* If you already have a valid user name and password for this Chipster service you can launch the Chipster client from the [link below http://193.144.35.148:8081/chipster.jnlp].

Revision as of 11:25, 24 April 2017

Overview For users For resource providers Infrastructure status Site-specific configuration Architecture




Accessing Chipster with CSG

Introduction

This guide is intended for researchers who want to use Chipster, is a user-friendly software for analyzing high-throughput data such as NGS and microarrays, in the cloud-based resources provided by EGI.

The Chipster server configured at CESGA offers:

  • 4 vCPU cores,
  • 16GB of RAM,
  • 200GB in /data
  • Software and tools (v3.11.2) are in /cvmfs/chipster.egi.eu/

This how-to has been tested in the EGI Applications on Demand Infrastructure.

The only pre-requisite to access and use the Chipster testbed is to be a member of this infrastructure.

Objectives

In this guide we will show how to

  • Create a temporary Chipster account to access the testbed;
  • Use the temporary account to access and run the bio-informatics applications.

Create a temporary Chipster account with CSG

To access the Chipster tested, a valid account is needed.