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Difference between revisions of "Chipster"
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(Created page with "{{Fedcloud_Menu}} {{TOC_right}} = Accessing Chipster with CSG = == Introduction == This guide is intended for researchers who want to use [http://chipster.csc.fi/ Chipster], i...") |
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This guide is intended for researchers who want to use [http://chipster.csc.fi/ Chipster], is a user-friendly software for analyzing high-throughput data such as NGS and microarrays, in the cloud-based resources provided by [https://wiki.egi.eu/wiki/Long-tail_of_science EGI]. | This guide is intended for researchers who want to use [http://chipster.csc.fi/ Chipster], is a user-friendly software for analyzing high-throughput data such as NGS and microarrays, in the cloud-based resources provided by [https://wiki.egi.eu/wiki/Long-tail_of_science EGI]. | ||
The Chipster server configured at CESGA offers: | The Chipster server configured at CESGA offers: | ||
* 4 vCPU cores, | |||
* 16GB of RAM, | |||
* 200GB in /data | |||
* Software and tools (v3.11.2) are in /cvmfs/chipster.egi.eu/ | |||
This how-to has been tested in the [https://access.egi.eu/ EGI Access Platform]. | This how-to has been tested in the [https://access.egi.eu/ EGI Access Platform]. | ||
The only pre-requisite to use the Galaxy web-portal is to be a member of this infrastructure. | The only pre-requisite to use the Galaxy web-portal is to be a member of this infrastructure. | ||
Revision as of 11:49, 24 April 2017
| Overview | For users | For resource providers | Infrastructure status | Site-specific configuration | Architecture |
Accessing Chipster with CSG
Introduction
This guide is intended for researchers who want to use Chipster, is a user-friendly software for analyzing high-throughput data such as NGS and microarrays, in the cloud-based resources provided by EGI.
The Chipster server configured at CESGA offers:
- 4 vCPU cores,
- 16GB of RAM,
- 200GB in /data
- Software and tools (v3.11.2) are in /cvmfs/chipster.egi.eu/
This how-to has been tested in the EGI Access Platform. The only pre-requisite to use the Galaxy web-portal is to be a member of this infrastructure.